2024
Computers in Biology and Medicine (2024). doi: 10.1016/j.compbiomed.2024.109072
[J73] Youn, Jason, Fangzhou Li, Gabriel Simmons, Shanghyeon Kim, and Ilias Tagkopoulos.
Abstract, NUTRITION 2024, American Society for Nutrition, Chicago, IL, 2024
[O17] Cheang, Shawn Ehlers, Cheng-Yu Charlie Weng, Nikita Bacalzo, Emelie Strandberg, Fangzhou Li, Mariana Barboza, Ilias Tagkopoulos, Keith Baar, and Carlito B. Lebrilla.
Journal of Agricultural and Food Chemistry (2024). doi: 10.1021/acs.jafc.4c01247
[J72] Cui, Youtian, Mary Riley, Marcus V. Moreno, Mateo M. Cepeda, Ignacio Arias Perez, Yan Wen, Lik Xian Lim, Eric Andre, An Nguyen, Cody Liu, Larry Lerno, Patrick K. Nichols, Harold Schmitz, Ilias Tagkopoulos, James A. Kennedy, Anita Oberholster, and Justin B. Siegel.
Journal of Agricultural and Food Chemistry (2024). doi: 10.1021/acs.jafc.3c07019
[J71] Tan, Cheng-En, Bishnu Prasad Neupane, Yan Wen, Lik Xian Lim, Cristina Medina Plaza, Anita Oberholster, and Ilias Tagkopoulos.
AI Magazine (2024). doi: 10.1002/aaai.12164
[J70] Tagkopoulos, Ilias, Mason J. Earles, Danielle G. Lemay, Xin Liu, Nitin Nitin, Aaron D. Smith, Tarek I. Zohdi, and Stephen F. Brown.
Journal of Autoimmunity (2024). doi: 10.1016/j.jaut.2024.103167
[J69] Furuya, Hiroki, Cuong Thach Nguyen, Trevor Chan, Alina I. Marusina, Alexander A. Merleev, Maria de la Luz Garcia-Hernandez, Shie-Liang Hsieh et al.
2023
Biomedicines (2023). doi: 10.3390/biomedicines11082261
[J68] Aboud, Orwa, Yin Liu, Lina Dahabiyeh, Ahmad Abuaisheh, Fangzhou Li, John Paul Aboubechara, Jonathan Riess, Orin Bloch Rawad Hodeify, Ilias Tagkopoulos, and Oliver Fiehn.
Current Research in Food Science (2023): 100500. doi: 10.1016/j.crfs.2023.100500
[J67] Naravane, Tarini, and Ilias Tagkopoulos.
Proceedings of the 12th Joint Conference on Lexical and Computational Semantics (*SEM 2023), Association for Computational Linguistics, Toronto, Canada, 2023. doi: 10.18653/v1/2023.starsem-1.20
[C19] Youn, Jason and Ilias Tagkopoulos.
AI for Agriculture and Food Systems Workshop (AIAFS AAAI-23), The 37th AAAI Conference on Artificial Intelligence, Washington, D.C., 2023. doi: 10.48550/arXiv.2301.11322
[C18] Youn, Jason, Fangzhou Li, and Ilias Tagkopoulos.
2022
PLOS One (2022). doi: 10.1371/journal.pone.0278121
[J66] Chan, Trevor, Cheng-En Tan, and Ilias Tagkopoulos.
Journal of Agricultural and Food Chemistry (2022). doi: 10.1021/acs.jafc.2c04519
[J65] Holt, Roberta R., Daniela Barile, Selina C. Wang, John P. Munafo Jr, Torey Arvik, Xueqi Li, Fanny Lee, Carl L. Keen, Ilias Tagkopoulos, and Harold H. Schmitz.
Journal of the American Medical Informatics Association (2022). doi: 10.1093/jamia/ocac186
[J64] Eetemadi, Ameen, Ilias Tagkopoulos.
Scientific Reports (2022). doi: s41598-022-18793-6
[J63] Kokkinos, Yiannis, JoAnn Morrison, Richard Bradley, Theodoros Panagiotakos, Jennifer Ogeer, Dennis Chew, Ciaran O’Flynn, Geert De Meyer, Phillip Watson, Ilias Tagkopoulos.
Computational and Structural Biotechnology Journal (2022). doi: 10.1016/j.csbj.2022.06.048
[J62] Rollins, Zachary A., Jun Huang, Ilias Tagkopoulos, Roland Faller, Steven C. George.
International Journal of Molecular Sciences (2022). doi: 10.3390/ijms23115985
[J61] Rai, Navneet, Minseung Kim, Ilias Tagkopoulos.
Nature Communications (2022). doi: 10.1038/s41467-022-29993-z
[J60] Youn, Jason, Navneet Rai, Ilias Tagkopoulos.
Computers and Electronics in Agriculture (2022). doi: 10.1016/j.compag.2022.106819
[J59] Tagkopoulos, Ilias, Stephen F Brown, Xin Liu, Qing Zhao, Tarek I Zohdi, J Mason Earles, Nitin Nitin, Daniel E Runcie, Danielle G Lemay, Aaron D Smith, Pamela C Ronald, Hao Feng, Gabriel David Youtsey.
2021
Applied Sciences (2021). doi: 10.3390/app112311290
[J58] Lee, Bo Mi, Ameen Eetemadi, Ilias Tagkopoulos.
Metabolic Engineering (2021). doi: 10.1016/j.ymben.2021.11.002
[J57] Matson, Morgan M., Mateo M. Cepeda, Angela Zhang, Anna E. Case, Erol S. Kavvas, Xiaokang Wang, Austin L. Carroll, Ilias Tagkopoulos, Shota Atsumi.
Journal of Dairy Science (2021). doi: 10.3168/jds.2021-20262
[J56] de Oliveira, Eduardo Barros, Fernanda Ferreira, Klibs Galvao, Jason Youn, Ilias Tagkopoulos, Noelia Silva-del-Rio, Richard Van Vleck Pereira, Vinicius Machado, Fabio Lima.
Frontiers in Microbiology (2021). doi: 10.3389/fmicb.2021.680553
[J55] Pereira, Beatriz Merchel Piovesan, Muhammad Adil Salim, Navneet Rai, Ilias Tagkopoulos.
Scientific Reports (2021). doi: 10.1038/s41598-020-70280-y
[J54] Kim, Ki-Jo, Su-Jin Moon, Kyung-Su Park, Ilias Tagkopoulos.
Frontiers in Microbiology (2021). doi: 10.3389/fmicb.2021.640923
[J53] Pereira, Beatriz Merchel Piovesan, Xiaokang Wang, Ilias Tagkopoulos.
Clinical Nutrition (2021). doi: 10.1016/j.clnu.2020.12.041
[J52] Eetemadi, Ameen, Ilias Tagkopoulos.
Foods (2021). doi: 10.1101/2020.09.10.292144
[J51] Risner, Derrick, Fangzhou Li, Jason Fell, Sara Pace, Ilias Tagkopoulos, Justin Siegel, Edward Spang.
2020
Frontiers in Artificial Intelligence (2020). doi: 10.3389/frai.2020.584784
[J50] Youn, Jason, Tarini Naravane, Ilias Tagkopoulos.
Biochemistry (2020). doi: 10.1021/acs.biochem.0c00665
[J49] Mak, Wai Shun, Xiaokang Wang, Rigoberto Arenas, Youtian Cui, Steve J Bertolani, Wen Qiao Deng, Ilias Tagkopoulos, David K Wilson, Justin B Siegel.
Clinical and Experimental Rheumatology (2020).
[J48] Joo, Young Bin, In-Woon Baek, Kyung-Su Park, Ilias Tagkopoulos, Ki-Jo Kim.
Nature Communications (2020). doi: 10.1038/s41467-020-18785-y
[J47] Wang, Xiaokang, Navneet Rai, Beatriz Merchel Piovesan Pereira, Ameen Eetemadi, Ilias Tagkopoulos.
Applied and Environmental Microbiology (2020). doi: 10.1128/AEM.00708-20
[J46] Pereira, Beatriz Merchel Piovesan, Xiaokang Wang, Ilias Tagkopoulos.
Frontiers in Microbiology (2020). doi:10.3389/fmicb.2020.00393
[J45] Eetemadi, Ameen, Navneet Rai, Beatriz Merchel Piovesan Pereira, Minseung Kim, Harold Schmitz, Ilias Tagkopoulos.
BWCNN: Blink to word, a real-time convolutional neural network approach
Proceesings of International Conference on Internet of Things (ICIOT 2020), Honolulu, 2020
[C17] Ramli, Albara Ah, Rex Liu, Rahul Krishnamoorthy, Xiaoxiao Wang, Ilias Tagkopoulos, and Xin Liu.
2019
Journal of veterinary internal medicine (2019). doi:10.1111/jvim.15623
[J44] Bradley, Richard, Ilias Tagkopoulos, Minseung Kim, Yiannis Kokkinos, Theodoros Panagiotakos, James Kennedy, Geert De Meyer, Phillip Watson, Jonathan Elliott.
Nutrients (2019). doi:10.3390/nu11123045
[J43] Elizabeth Chin, Gabriel Simmons, Yasmine Bouzid, Annie Kan, Dustin Burnett, Ilias Tagkopoulos, Danielle G. Lemay.
Applied and Environmental Microbiology (2019): AEM-00377. doi:10.1128/AEM.00377-19
[J42] Pereira, Beatriz Merchel Piovesan, Ilias Tagkopoulos.
Annals of the Rheumatic Diseases (2019): annrheumdis-2018. doi:10.1136/annrheumdis-2018-214778
[J41] Moon, Su-Jin, Jung Min Bae, Kyung-Su Park, Ilias Tagkopoulos, Ki-Jo Kim.
Clinical Immunology (2019). doi:10.1016/j.clim.2019.03.002
[J40] Kim, Ki-Jo, Minseung Kim, Iannis Adamopoulos, Ilias Tagkopoulos.
Biotechnology and bioengineering 116, no. 3 (2019): 693-703. doi:10.1002/bit.26898
[J39] Rai, Navneet, Linh Huynh, Minseung Kim, Ilias Tagkopoulos.
2018
The Korean journal of internal medicine (2018). doi:10.3904/kjim.2018.349
[J38] Kim, Ki-Jo, and Ilias Tagkopoulos.
Bioinformatics (2018). doi:10.1093/bioinformatics/bty945
[J37] Eetemadi, Ameen, and Ilias Tagkopoulos.
Nature communications 9, no. 1 (2018): 3562. doi:10.1038/s41467-018-05807-z
[J36] Wang, Xiaokang, Violeta Zorraquino, Minseung Kim, Athanasios Tsoukalas, and Ilias Tagkopoulos.
Molecular omics 14, no. 1 (2018): 8-25. doi:10.1039/C7MO00051K
[J35] Kim, Minseung, and Ilias Tagkopoulos.
BioRxiv (2018): 335679. doi:10.1101/335679
[J34] Kim, Ki-Jo, Navneet Rai, Minseung Kim, and Ilias Tagkopoulos.
2017
PLoS computational biology 13, no. 9 (2017): e1005661. doi:10.1371/journal.pcbi.1005661
[J33] Kim, Minseung, Ameen Eetemadi, and Ilias Tagkopoulos.
ACS chemical biology 12, no. 9 (2017): 2465-2473. doi:10.1021/acschembio.7b00400
[J32] Freund, Gabriel S., Terrence E. O’Brien, Logan Vinson, Dylan Alexander Carlin, Andrew Yao, Wai Shun Mak, Ilias Tagkopoulos, Marc T. Facciotti, Dean J. Tantillo, and Justin B. Siegel.
The Plant Journal 91, no. 1 (2017): 70-84. doi:10.1111/tpj.13547
[J31] Bjornson, Marta, Gerd Ulrich Balcke, Yanmei Xiao, Amancio de Souza, Jin‐Zheng Wang, Dina Zhabinskaya, Ilias Tagkopoulos, Alain Tissier, and Katayoon Dehesh.
2016
Molecular biology and evolution 34, no. 3 (2016): 707-717. doi:10.1093/molbev/msw269
[J30] Zorraquino, Violeta, Minseung Kim, Navneet Rai, and Ilias Tagkopoulos.
ACS synthetic biology 5, no. 12 (2016): 1412-1420. doi:10.1021/acssynbio.5b00205
[J29] Huynh, Linh, and Ilias Tagkopoulos.
Nature communications 7 (2016): 13090. doi:10.1038/ncomms13090
[J28] Kim, Minseung, Navneet Rai, Violeta Zorraquino, and Ilias Tagkopoulos.
Ecosphere 7, no. 3 (2016): e01263. doi:10.1002/ecs2.1263
[J27] Meisner, Matthew H., Jay A. Rosenheim, and Ilias Tagkopoulos.
PloS one11, no. 1 (2016): e0147596. doi:10.1371/journal.pone.0147596
[J26] Carlin, Dylan Alexander, Ryan W. Caster, Xiaokang Wang, Stephanie A. Betzenderfer, Claire X. Chen, Veasna M. Duong, Carolina V. Ryklansky et al.
2015
JMIR medical informatics 3, no. 1 (2015): e11. doi:10.2196/medinform.3445
[J20] Tsoukalas, Athanasios, Timothy Albertson, and Ilias Tagkopoulos.
PLoS computational biology 11, no. 3 (2015): e1004127. doi:10.1371/journal.pcbi.1004127 Erratum in: PLoS computational biology (2015): e1004617.
[J21] Kim, Minseung, Violeta Zorraquino, and Ilias Tagkopoulos.
Nature 517, no. 7536 (2015): 571. doi:10.1038/nature14099.
[J22] Taylor-Teeples, Mallory, L. Lin, M. De Lucas, G. Turco, T. W. Toal, A. Gaudinier, N. F. Young et al.
Scientific reports 5 (2015): 10658. doi:10.1038/srep10658.
[J23] Rai, Navneet, Aura Ferreiro, Alexander Neckelmann, Amy Soon, Andrew Yao, Justin Siegel, Marc T. Facciotti, and Ilias Tagkopoulos.
ACS synthetic biology 4, no. 8 (2015): 890-897. doi:10.1021/sb500339k
[J24] Huynh, Linh, and Ilias Tagkopoulos.
arXiv preprint arXiv:1511.05688 (2015).
[J25] Eetemadi, Ameen, and Ilias Tagkopoulos.
Parameter inference for gene circuit models
Proceedings of the 7th International Workshop on Bio-design Automation, IWBDA’15, Seattle, 2015
[C16] Huynh, Linh, and Ilias Tagkopoulos.
2014
bioRxiv (2014): 010595. doi:10.1101/010595.
[J15] Zorraquino-Salvo, Violeta, Semarhy Quinones-Soto, Minseung Kim, Navneet Rai, and Ilias Tagkopoulos.
Molecular systems biology 10, no. 7 (2014): 735. doi:10.15252/msb.20145108
[J16] Carrera, Javier, Raissa Estrela, Jing Luo, Navneet Rai, Athanasios Tsoukalas, and Ilias Tagkopoulos.
Gold medal in International Genetically Engineered Machine (iGEM) (2014)
[J17] Cohen, Aaron, James Lucas, Lucas Murray, Sarah Ritz, Simon Staley, Brian Tamsut, Marc Facciotti, Justin Siegel, Ilias Tagkopoulos, and Selena Wang.
BMC systems biology 8, no. 1 (2014): 80. doi:10.1186/1752-0509-8-80
[J18] Aung, Hnin H., Athanasios Tsoukalas, John C. Rutledge, and Ilias Tagkopoulos.
ACS synthetic biology 3, no. 8 (2014): 556-564. doi:10.1021/sb400139h
[J19] Huynh, Linh, and Ilias Tagkopoulos.
Integration of circuit design automation and genome-scale modeling
Proceedings of the 6th International Workshop on Bio-design Automation, IWBDA’14, Boston, 2014
[C15] Huynh, Linh, Minseung Kim, and Ilias Tagkopoulos.
An integrative genome-scale E. coli model and targeted experimentation methodology for systems and synthetic biology
2nd Conference on Quantitative Biology, q-bio’14, Hawaii, 2014
[O15] Kim, M., J. Carrera, L. Huynh, R. Estrela, N. Rai, A. Tsoukalas, and I. Tagkopoulos.
Petascale Simulations of Complex Biological Behavior in Fluctuating Environments
2nd NCSA Blue Waters Symposium for Petascale Science and Beyond, Champaign, IL, May, 2014
[O16] Tagkopoulos, Ilias.
2013
Molecular systems biology 9, no. 1 (2013): 643. doi:10.1038/msb.2012.76
[J9] Dragosits, Martin, Vadim Mozhayskiy, Semarhy Quinones‐Soto, Jiyeon Park, and Ilias Tagkopoulos.
Bioengineered 4, no. 1 (2013): 5-8. doi:10.4161/bioe.21935
[J10] Tagkopoulos, Ilias.
ACS synthetic biology 2, no. 2 (2013): 111-120. doi:10.1021/sb300114d Erratum in: ACS synthetic biology (2013):351
[J11] Yao, Andrew I., Timothy A. Fenton, Keegan Owsley, Phillip Seitzer, David J. Larsen, Holly Sit, Jennifer Lau et al.
ACS synthetic biology 2, no. 5 (2013): 263-273. doi:10.1021/sb300095m
[J12] Huynh, Linh, Athanasios Tsoukalas, Matthias Köppe, and Ilias Tagkopoulos.
Journal of the American Medical Informatics Association 21, no. 2 (2013): 315-325. doi:10.1136/amiajnl-2013-001815
[J13] Gultepe, Eren, Jeffrey P. Green, Hien Nguyen, Jason Adams, Timothy Albertson, and Ilias Tagkopoulos.
BMC bioinformatics 14, no. 1 (2013): 137. doi:10.1186/1471-2105-14-137
[J14] Pavlogiannis, Andreas, Vadim Mozhayskiy, and Ilias Tagkopoulos.
Optimizing module matching for synthetic gene circuit design automation
Proceedings of the 5rd International Workshop on Bio-design Automation, IWBDA’13, London, 2013
[C14] Huynh, Linh, and Ilias Tagkopoulos.
Cross-stress protection in bacteria: an evolutionary perspective
Department of Microbiology and Environmental Toxicology, UCSC, 2013
[O10] Tagkopoulos, Ilias.
Quorum Sensing in Bacteria
NSF BioMath Module, COMAP, pp. 1-42.
[O13] Evitts, T., K. Gabric, and I. Tagkopoulos.
A automated synthetic gene circuit design tool based on mathematical optimization
1st Conference on Quantitative Biology, q-bio’13, Honolulu, Hawaii, 2013.
[O14] Carrera, J., L. Huynh, and I. Tagkopoulos.
2012
PloS one 7, no. 4 (2012): e35529. doi:10.1371/journal.pone.0035529
[J3] Huynh, Linh, John Kececioglu, Matthias Köppe, and Ilias Tagkopoulos.
Journal of biological engineering 6, no. 1 (2012): 2. doi:10.1186/1754-1611-6-2
[J4] Dragosits, Martin, Daniel Nicklas, and Ilias Tagkopoulos.
BMC bioinformatics, vol. 13, no. 10, p. S13. BioMed Central, 2012. doi:10.1186/1471-2105-13-S10-S13
[J5] Mozhayskiy, Vadim, and Ilias Tagkopoulos.
BMC bioinformatics, vol. 13, no. 10, p. S10. BioMed Central, 2012. doi:10.1186/1471-2105-13-S10-S10
[J6] Mozhayskiy, Vadim, and Ilias Tagkopoulos.
Journal of Biological Chemistry 287, no. 40 (2012): 33533-33544. doi:10.1074/jbc.M112.392332
[J7] Liang, Yajun, Heng Wu, Rong Lei, Robert A. Chong, Yong Wei, Xin Lu, Ilias Tagkopoulos et al.
Integrative Biology 5, no. 2 (2012): 262-277. doi:10.1039/c2ib20095c
[J8] Mozhayskiy, Vadim, and Ilias Tagkopoulos.
Scaling responsibly, Towards a reusable, modular, automated gene circuit design
Proceedings of the 3rd International Workshop on Bio-design Automation, IWBDA’12, San Francisco, 2012
[C11] Huynh, Linh, and Ilias Tagkopoulos.
A robust, library-based, optimization-driven method for automatic gene circuit design
2nd IEEE International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), Las Vegas, NV, pp.1-6, 24-26, 2012
[C12] Huynh, Linh, and Ilias Tagkopoulos.
A Bayesian network for early diagnosis of sepsis patients: a basis for a clinical decision support system
2nd IEEE International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), Las Vegas, NV, pp.1-5, 23-25, 2012
[C13] Gultepe, Eren, Hien Nguyen, Timothy Albertson, and Ilias Tagkopoulos.
Guided step-wise adaptation of microbial populations
7th Annual Systems-to-Synthesis Symposium, San Diego, CA, 2012.
[O8] Mozhayskiy, V., M. Dragosits, and I. Tagkopoulos.
Network floods reveal regulatory control flows and minimal networks in synthetic and bacterial datasets
20th Annual Conference on Intelegent Systems for Molecular Biology, ISMB2012, Long Beach, CA. 2012.
[O9] Pavlogiannis, A., V. Mozhayskiy, and I. Tagkopoulos.
Synthetic biology and evolutionary aspects of internal and external stress for industrial microbiology
4th ÖGMBT annual meeting, September 17-19, 2012, Graz, Austria.
[O11] Dragosits, M., et al.
Guided step-wise adaptation of microbial populations in silico and in vivo
7th Annual Systems-to-Synthesis Symposium, San Diego, CA, 2012
[O12] Mozhayskiy, V., M. Dragosits, and I. Tagkopoulos.
2011
Automated Design of Synthetic Gene Circuits through Linear Approximation and Mixed Integer Optimization
Proceedings of the 3rd International Workshop on Bio-design Automation, IWBDA2011, San Diego, 2011
[C7] Huynh, Linh, John Kececioglu, and Ilias Tagkopoulos.
In silico Evolution of Multi-scale Microbial Systems in the Presence of Mobile Genetic Elements and Horizontal Gene Transfer
ISBRA2011, Lecture Notes in Bioinformatics, LNBI 6674, pp.262-273, Springer, 2011
[C8] Mozhayskiy, V. , and Ilias Tagkopoulos.
A Scalable Multi-scale Framework for Parallel Simulation and Visualization of Microbial Evolution
TeraGrid2011; Salt Lake City, Utah, 2011, DOI:10.1145/2016741.2016749 (Best Paper Award)
[C9] Mozhayskiy, Vadim, Bob Miller, Kwan-Liu Ma, and Ilias Tagkopoulos.
EVEVis: A Multi-Scale Visualization System for Dense Evolutionary Data
1st IEEE Symposium on Biological Data Visualization, pp. 143-150, Providence, Rhode Island, 2011
[C10] Miller, Robert, Vadim Mozhazskiy, Ilias Tagkopoulos, and Kwan-Liu Ma.
Facilitated Variation of in silico Microbial Populations Affects Evolutionary Rates
Poster and Talk, 7th International Symposium on Bioinformatics Research and Applications, Changsha, China, May 2011.
[O4] Mozhayskiy, V., and I. Tagkopoulos.
Automated Design of Synthetic Gene Circuits through Linear Approximation and Mixed Integer Optimization
Proceedings of the 3rd International Workshop on Bio-design Automation, IWBDA’11, San Diego, 2011.
[O5] Huynh, L., J. Kececioglu, and I. Tagkopoulos.
Microbial Evolution in Stressful Environments: Theory and Experiments
Poster, 11th Conference on Microbial Genetics and Ecology, BAGECO’11, Corfu, Greece, 2011.
[O6] Tagkopoulos, Ilias.
Self-regulatory circuits for recombinant protein production
Poster, 11th Conference on Microbial Genetics and Ecology, BAGECO’11, Corfu, Greece, 2011.
[O7] Tagkopoulos, Ilias.
2010
Simulations of Microbial Evolution in Fluctuating Environments
Poster, 18th Annual International Conference on Intelligent Systems for Molecular Biology, ISMB’10, Boston, 2010.
[O1] Mozhayskiy, V., and I. Tagkopoulos.
Emergence of Robust Biological Networks in Petascale Simulations of Bacterial Evolution
Abstract, Extreme Scale I/O and Data Analysis Workshop, NSF/NCSA/TACC, Austin, TX, 2010
[O2] Mozhayskiy, V., and I. Tagkopoulos.
Large-scale Evolutionary Simulations of Complex Microbial Behaviors in Dynamic Environments
Poster, 9th Annual International Conference on Computational Systems Bioinformatics, CSB’10, Stanford, 2010.
[O3] Mozhayskiy, V., and I. Tagkopoulos.
2008
science 320, no. 5881 (2008): 1313-1317. doi:10.1126/science.1154456
[J2] Tagkopoulos, Ilias, Yir-Chung Liu, and Saeed Tavazoie.
2006
Journal of bioinformatics and computational biology 4, no. 02 (2006): 275-298. doi:10.1142/S0219720006002065
[J1] Kung, Sun-Yuan, Man-Wai Mak, and Ilias Tagkopoulos.
2005
Multi-Metric and Multi-Substructure Biclustering Analysis for Gene Expression Data
CSB2005, Proceedings of the IEEE Computational Systems Bioinformatics Conference, pp.123-134, Stanford, California, 2005.
[C3] Kung, S.Y., Man-Wai Mak, and Ilias Tagkopoulos.
Multi-class Biclustering and Classification Based on Modeling of Gene Regulatory Networks
BIBE2005, Proceedings of the 5th IEEE Symposium on Bioengineering and Bioinformatics, pp. 89-96, Minneapolis, Minnesota, 2005
[C4] Tagkopoulos, Ilias, Nikolai Slavov, and S.Y. Kung.
A Transcriptional Approach to Gene Clustering
CIBCB2005, Proceedings of the IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, pp.1-7, San Diego, California, 2005. (student paper award)
[C5] Tagkopoulos, Ilias.
Gene Classification and Regulatory Prediction Based on Transcriptional Modeling.
Proceedings of the IEEE Symposium on Signal Processing and Information Technology, ISSPIT2005, pp. 29-34, Proceedings of the Firth IEEE International Symposium on Signal Processing and Information Technology, Athens, Greece, 2005.
[C6] Tagkopoulos, Ilias, and Serpanos, D.
2003
A Custom FPGA for the Simulation of Gene Regulatory Networks
GLSVLSI2003, Proceedings of the 13th ACM Great Lakes Symposium on VLSI, pp. 135-141, Washington D.C., 2003
[C2] Tagkopoulos, Ilias, Charles Zukowski, German Cavelier, and Dimitris Anastassiou.
2001
Comparison of DWT Scheduling Algorithms Alternatives on Programmable Platforms
ISCAS2001, Proceedings of the International Symposium on Circuits and Systems, , pp. 761-764, vol. 2, Sidney, Australia, 2001
[C1] Zervas, N.D., I. Tagkopoulos, V. Spiliotopoulos, P. Anagnostopoulos, D. Soudris, and C. E. Goutis.